PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448762.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 330aa    MW: 37380 Da    PI: 8.7485
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-371212784135
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa.sec.. 73 
                      kdrhski T++g+RdRR+Rls++ a++fF Lqd+LGfdk+skt+eWLl +++ +i el++                         +s+ sec  
  XP_016448762.1 121 NKDRHSKINTARGLRDRRMRLSLDAARKFFSLQDMLGFDKASKTVEWLLIKSESEIEELAKGnkgggipkqscsttngigaistA-ISSiSECev 214
                     69***********************************************************999988877777666666655431.222344544 PP

             TCP  74 .eaesssssasnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                      +  ++s        +       k ak a k+  ++++ a++  l   e+r++arararert+ k+++ ++
  XP_016448762.1 215 iSGTDESF-------SitykkklKTAKGASKKTAKTARRAAFDRLITrETRNQARARARERTKIKKSLGKS 278
                     43333333.......144544446666666555555555556666666**************999887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-42120273IPR005333Transcription factor, TCP
PROSITE profilePS5136933.753121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.494255272IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MYPPSNSCNY SPIFNIPSPC MQYGDELFFQ YYPDHFLQQQ QVPLIEDQSV DILADCTENV  60
TNEETVINTD TVKVLYDTGA VTNSQCWGGN EEVEEGRENK RNDMRSTISI IHVRKNKKCS  120
NKDRHSKINT ARGLRDRRMR LSLDAARKFF SLQDMLGFDK ASKTVEWLLI KSESEIEELA  180
KGNKGGGIPK QSCSTTNGIG AISTAISSIS ECEVISGTDE SFSITYKKKL KTAKGASKKT  240
AKTARRAAFD RLITRETRNQ ARARARERTK IKKSLGKSKE NSADYCNLVD NYGDWSQFSI  300
FNYQKNAVGI SHDQQQFTDF QFCGNKLWEV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608155.10.0PREDICTED: transcription factor CYCLOIDEA-like isoform X1
RefseqXP_016448762.10.0PREDICTED: transcription factor CYCLOIDEA-like isoform X1
TrEMBLF6KB962e-85F6KB96_SOLTU; BRANCHED1B
STRINGSolyc06g069240.1.12e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-19TCP family protein